Where evolution gets a bad name is connected to the atheists fixating on evolution as a way to create a distinction based on politics, instead of trying to show the process of evolution was at work after 6000 years ago, unrelated to the religious or philosophical divide.
Evolution doesn't have a bad name except with creationists, and then only because it threatens their beliefs.The scientific community pays them no heed.
Why is it that atheist seem to be more interested in avoiding the burden proof rather than showing that their view is correct?
The theory is well established and cannot be toppled, just tweaked. You can find the evidence and supporting arguments online if you're interested.
Can you quote a single scientific article that concludes that number 3 is true?
There is no need. We know the mechanism of evolution. Your argument might be that there is a second mechanism working with it. Even if true, that wouldn't negate he fact that genetic variation + natural selection + time = speciation. If you want to claim that more than this is at work, feel free to make the claim and support it.
As for number 3 "the idea that Darwinian mechanisms can account for the diversity of life" my objections are: Genetic entropy: mutations on average tend to deteriorate genomes, natural selection is not strong enough to revert this trend.
Now you've made a claim about natural selection's inability to overcome deleterious mutations. That seems like a random speculation without any support. The burden of proof is yours, but only if you wish to be believed.
Irreducible complexity I am talking about the actual argument presented by Behe , not the strawman that dawinists tend to invent.In some cases a single benefit requires multiple independent genetic changes. For example even a "simple eye" that can only detect light would be useless if there is not an other mechanism that causes a reaction in the organism when light is detected. Any of them is useless without the other. Both have to appear at the same time
Irreducible complexity and Behe have both been debunked (see the Dover trial transcripts). Irreducible complexity has never been demonstrated to exist in any biological system. Multiple examples have been offered (the hemostasis cascade, the immune system, the bacterial flagellum, and compound eyes), and all shown to be feasible for a blind, undirected process to assemble.
Pretend that an ancient ape (the ancestor of humans and chimps) received a beneficial mutación , this mutation is so beneficial that in just 1 generation (10 years) this mutation becomes fixed and dominant in the population. Repeat the process for 500,000 generations (5 million years) and you end up with an ape who accumulated 500,000 mutations. We are suppose to share 99% of our genetic material with chimps. This represents 30,000,000 base pairs (given that our genome is 3B base pairs long.) In other words as an evolutionist you need to explain how 30,000,000 benefitial mutations took place and became fixed in the genome in just 5,000,000 years. Even in the best possible (and unrealistic) scenario one can imagine at most account for 500,000 differences...... You need to explain 30,000,000 genetic differences between chimps and humans.
The flaw here is that this process is occurring in every ape, not just this one series of apes. If the ape population is 100,000, that one beneficial mutation per generation can be occurring 100,000 times over those ten years.
Furthermore, if 99% of our genome comprises 30 million base pairs, then the 1% difference would be 300,000 base pairs.